Skip to main content

Cutting edge computational solutions for large scale high-dimensional data sets arising out of new biology

Cutting edge computational solutions for large scale high-dimensional data sets arising out of new biology 
New biology is a branch of biology that that deals with the nature of biological phenomenon at the molecular level. In post genomic era a new language has been created for new biology viz.,Genomics,Functional Genomics, Proteomics,cDNA,microarrays, Global Gene Expression Patterns .New Computational Tools are used for Sequencing, Analyzing experimental data, Searching, Pattern matching, Data mining, Gene discovery, Function discovery aiming to Classify, Identify patterns, predictions, Create models & Prediction, Assessment and Comparison,Optimization,Better utilize existing knowledge. The new wave of high-throughput technologies in genomics and proteomics are constantly improving and generating an unprecedented amount of data that can be termed as Big Data means large data sets in terms of volume, variety, velocity, variability, veracity, & complexity. Bioinformatics researchers are currently confronted with a huge challenge of handling, processing and moving these large-scale biological data, a problem that will only increase in coming years. Therefore, cloud computing bears great promise for effectively addressing issues of large-scale data generated by high-throughput technologies in the fields of genomics, proteomics and other biological research areas. Cloud-based bioinformatics resources have changed the approaches toward huge datasets, providing much faster data acquisition, analysis rates and storage. New cloud-based bioinformatics computing tools, algorithms, and workflows are consistently being developed and successfully deployed. Basically, the cloud refers to software and services that run on the internet instead of one’s computer. The increased use of next generation sequencing has led to challenges in data analysis, large-scale data storage and management, multi-site data integration, validation for quality and scale-up of informatics. It is integral to overcome these analysis and informatics challenges to successfully translate NGS research and data from the lab to clinical stage. Success in the life sciences will depend on our ability to properly interpret the large-scale, high-dimensional data sets that are generated by these technologies, which in turn requires us to adopt advances in informatics. New technological advances and the availability of ‘big data’ enable us to probe deep into the origin of life and to further understand evolutionary processes. This paper reviews the current development of cloud based computational technologies that can be applied and pinpoints their potential beneficial applications as well as implications for Life Sciences. Big data Analytics platforms that offer implementations of the Map Reduce computational pattern e.g., Hadoop make it easy for developers to perform data-intensive computations at scale is also highlighted. The New Biology approach has the potential to meet critical societal goals in food, the environment, energy, and health. 
5th International Conference on Biometrics & Biostatistics October 20-21, 2016   Houston, USA 
Ajit Kumar Roy, J Biom Biostat 2016, 7:4(Suppl) http://dx.doi.org/10.4172/2155-6180.C1.001

Comments

Popular posts from this blog

Bioinformatics Resources on Web

Bioinformatics Resource on the Web(Freely Available) Nucleotide Sequence Databases (the principal ones) ·          NCBI  - National Center for Biotechnology Information ·          EBI  - European Bioinformatics Institute ·          DDBJ  - DNA Data Bank of Japan Protein Sequence Databases ·          SWISS-PROT & TrEMBL  - Protein sequence database and computer annotated supplement ·          UniProt  - UniProt (Universal Protein Resource) is the world's most comprehensive catalog of information on proteins. It is a central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR. ·          PIR  - Protein Information Resource ·  ...

Modelling Forecasting Artificial Neural Network and Expert System in Fisheries and Aquaculture

The book entitled 'Modelling Forecasting Artificial Neural Network and Expert System in Fisheries and Aquaculture is the first of its kind available in the market. The book contains altogether sixteen chapter covering both capture and culture fisheries aspects contributed by various subject matter specialists engaged in research and development activities at various national institutes of repute. Each of the chapters has been specially written by an expert in the field bringing together in a single volume a range of approaches and reviews covering conceptual and mathematical model empirical and theoretical model deterministic and stochastic model biological model pond ecosystem model and explanatory models. Both linear as well as nonlinear models applied to fisheries and aquaculture research has been dealt with illustrated examples on current real fisheries data. Adequate attention has been given to select chapters that contain both theoretical as well as applied areas of researc...

Evaluation of Performance of Primary Fisheries Cooperative Societies (MSS) of Tripura

Evaluation of Performance of Primary Fisheries Cooperative Societies (MSS) of Tripura A.D. Upadhyay, M. Sinha, 1 , A.K. Roy, J.R. Dhanze and D.K. Pandey College of Fisheries, Central Agricultural University, Lembucherra Tripura – 799 210, India 1 Directorate of Fisheries, Govt. of Tripura, Agartala, India Email:ad_up@rediffma Abstract Fishermen cooperatives are recognized as means of socio-economic development of fishers/fish  farming community, which generally belong to weaker section of the society. The state of Tripura  has made significant progress in fish production by 197 per cent from 2004-05 to 2011-12. An  attempt has been made in this paper to analyse the status of Fishermen Cooperatives in Tripura with  respect to water holdings and fish and fish seed production. It has been found that the fishermen  cooperative in Tripura like other states of the country is not encouraging because majority of them...

Surprising Mind Blowing Facts and Figures of Big Data (Revised): Big data Statistics (Big data-Series-2 Book 1) Kindle Edition

Surprising Mind Blowing Facts and Figures of Big Data (Revised): Big data Statistics (Big data-Series-2 Book 1)   Kindle Edition by  Ajit Roy   (Author) Big Data” is a hot topic and getting a lot of media and business attention. Everyone is talking about big data, from the challenges to yearly spending, job creation and even the tools required for big data projects. Many believe big data will help businesses make better decisions. Big Data is the expression of this gigantic mass of information that we are constantly generating at the global level due to the tremendous amount of data generated daily from fields such as business, research, and sciences. Big Data is everywhere and represents huge opportunities to those who can use it effectively. Big Data is the result of practically everything in the world being monitored and measured; creating data faster than the available technologies can store, process or manage it. Big data is a buzzword that is ambiguous and of...

Cashless Economy in India- Present Scenario, Potential, Prospect and Challenges: Post Demonetisation Impact

Cashless Economy in India- Present Scenario, Potential, Prospect and Challenges:https://www.amazon.in/dp/B06XDY34DJ/# March 2017 Edition: 1 Publisher: amazon kindle;Amazon Digital Services LLC Editor: ajit roy ISBN: ASIN: B06XDY34DJ Projects:  Big Data and Data Science Initiative in India- Upcoming Job Opportunities: Big Data Job Opportunities in India (Big Data-Series-4) (Volume 1) Paperback • ASIN: 1535188790 • ISBN-13: 978-1535188791 Post Demonetisation-Cashless Economy-digital Indi a To combat black money, corruption, counterfeit currency and terror financing, government took decision on November 8, 2016 to ban Rs 500 & 1000 notes followed by putting a cap on withdrawals from banks and ATMs, Prime Minister Narendra Modi floated the idea of a cashless society. This is a public sector innovation unthought-of in history. A cultural-economic revolution in the making. But this surprise demonetization also pushed millions of new users onto the country’s ...

Applied Big Data Analytics': Evolution, Platforms & Tools, Use Cases, Benefits, Impact and Paradox'

Applied Big Data Analytics': Evolution, Platforms & Tools, Use Cases, Benefits, Impact and Paradox' by   Ajit Roy really liked it   4.00   ·    Rating details  ·    1 rating   ·    0 reviews The impact of data abundance extends well beyond business ensuring funding for social programs. Big Data has the potential to be "humanity's dashboard," an intelligent tool that can help combat poverty, crime and pollution. All these burning issues are covered in the following chapters of the book entitled, 'Applied Big Data Analytics: Evolution, Platforms & Tools, Use cases, Benefits, Impact and Paradox' 1 History of Big Data. .  2 Definitions & Surprising Statistics about Big Data 4 Open Source Big Data Analytical Platforms and Tools 5 Use Cases & Advantages & Benefits of Big Data 6 Impact of Big Data on Business, Economy and Society 7 Impact of Big data on Healthcare 8 Transforming Social Welfar...

Applied Computational Biology and Statistics in Biotechnology and Bioinformatics

“Applied Computational Biology and Statistics in Biotechnology and Bioinformatics”: ISBN 9789380235929; Year 2012; Pages 1172 pages, 25cm; Language;English   Editor: Ajit Kumar Roy: Consultant (Statistics), Department of Economics and Statistics, College of Fisheries, Central Agricultural University, Lembucherra-799 210, Agartala, Tripura (W), India The book entitled “Applied Computational Biology and Statistics in Biotechnology and Bioinformatics ” is aimed to cater to the growing demand of academia, researchers and commercial ventures. Altogether there are forty-four chapters divided into the following broad sections like 1. Bioinformatics, Genomics and Proteomics, 2. Phylogeny 3. Drug Design and Epigenomics 4. Advanced Computational Tools and Techniques 5. Statistical methods for computational biology, data mining and visualization 6. Socio Economics and Ethics. This book presents the foundations of key problems in computational molecular biology and bioinformatics....

A Structured Review of Relation between Full Moon and Different Aspects of Human Health

A Structured Review of Relation between Full Moon and Different Aspects of Human Health May 2017 Journal of Biometrics & Biostatistics 1(2): 1007.(2):4 Projects:  Bioinformatics/computational Biology Big Data And Data Science Full moon is the lunar phase that occurs when the moon is illuminated completely as seen from the earth Across the centuries many a person has altered the phrase, ‘there must be a full moon out there’ in an attempt to explain weird happening at night. Even today many people think the mystical power of full moon induce erratic behavior, psychiatric, hospital admission, suicide, homicide, sleep pattern, birth of baby, emergency room call, traffic accident and all manners of strange events. The main objective of this review is to find out the effect of full moon on different aspect of human health. The study was undertaken Kumudini Women’s Medical College, Bangladesh during the period between June 2016 to May 2017. Here we summarized the...

Quantitative Assessment of Trend of Water Area Development, Fish Production, Fish Seed Production Over Successive Plan Periods of Nagaland

Quantitative Assessment of Trend of Water Area Development, Fish Production, Fish Seed Production Over Successive Plan Periods of Nagaland March 2013 Projects:  Fisheries/Aquaculture Econometrics/Statistics Ajit kumar Roy Anil Upadhyay Khriezhato Nakhro                                                          Abstract  A complete account of fisheries resources that includes rivers, lakes, bheels pond and tanks along with Government initiatives for fisheries development are compiled for Nagaland well known for its fish biodiversity. In spite of the available resources, in terms of aquaculture production the state of Nagaland could not make visible impact so far. The meager production of the state is still far from self-sufficient and this can be attributed to a number of constraints such as land locke...